CDS

Accession Number TCMCG027C12654
gbkey CDS
Protein Id XP_018839499.1
Location complement(join(34395390..34395404,34395781..34397748,34398086..34398535,34399479..34399739,34400079..34400180,34402591..34402962))
Gene LOC109005153
GeneID 109005153
Organism Juglans regia

Protein

Length 1055aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA350852
db_source XM_018983954.2
Definition polyadenylation and cleavage factor homolog 4 [Juglans regia]

EGGNOG-MAPPER Annotation

COG_category A
Description isoform X1
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko01001        [VIEW IN KEGG]
ko03019        [VIEW IN KEGG]
ko03021        [VIEW IN KEGG]
KEGG_ko ko:K14400        [VIEW IN KEGG]
ko:K14510        [VIEW IN KEGG]
EC 2.7.11.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03015        [VIEW IN KEGG]
ko04016        [VIEW IN KEGG]
ko04075        [VIEW IN KEGG]
map03015        [VIEW IN KEGG]
map04016        [VIEW IN KEGG]
map04075        [VIEW IN KEGG]
GOs GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0000993        [VIEW IN EMBL-EBI]
GO:0001098        [VIEW IN EMBL-EBI]
GO:0001099        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005739        [VIEW IN EMBL-EBI]
GO:0005849        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006353        [VIEW IN EMBL-EBI]
GO:0006366        [VIEW IN EMBL-EBI]
GO:0006369        [VIEW IN EMBL-EBI]
GO:0006378        [VIEW IN EMBL-EBI]
GO:0006379        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019899        [VIEW IN EMBL-EBI]
GO:0031123        [VIEW IN EMBL-EBI]
GO:0031124        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043175        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043631        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070063        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGAAACGCGTAGATCCTTCGATAGATCGAGAGAACCGGGCTTGAAGAAGCCCCGATTGGCCGAGGAGATTGAGCGCGGTAAGAACCCGAACCCGAACGGGAATGGCCGCCCTTTCGTTCAGAGATCAGTTGTGGTGCCGCCGCCAAGGTTCCGACCGAGTGATAGAGATTCCGAAAGCAGCGACTCGGGCCGAGGGGGTTATCAGCCTCAACCGCCGCAGCATCAGGAACTCGTCAGCCAGTACAGGACTGCGCTCGCCGAGCTCACTTTCAATTCGAAGCCTATCATCACTAACTTGACTATAATTGCTGGCGAGAACCTCCACGCTGCCAAGGCAATCGCCGCCACTGTCTGCGCCAACATTCTCGAGGTTCCTACTGAGCAAAAGCTGCCTTCACTCTATCTTTTAGACAGTATCGTAAAGAATATTGGGAGGGATTACATAAAGTACTTTGCTGCTAGACTACCTGAGGTTTTCTGCAAGGCATATAGGCAAGTAGATCCTGCTGTACATTCGAGTATGCGTCATCTTTTTGGAACTTGGAAAGGAGTCTTCCCTCCTCCAGCACTTCAGATGATTGAGAAAGAACTTGGCTTTACTCCCATAATCAATGTTTCTTCTTCATTAGCTACTACAACATCTAAGCCAGATTCGCAGTCTCAACGCCAACCACACAGCATTCATGTAAATCCCAAGTATTTGGAAAGGCAGCGGCTTCAGCAGTCTGGCAGGAATGTTCAGCGAACTAATAGAGATGGACCAAGTGAATCTGTTCATGAGAAGACCATTGGTGCTGCATTTGGAGACTATGAATACTCTTCTGATCTTTCAAGGAATTCAGGCTCAGGAACTGAAAGAACTGGTGGGAGGATGACTGAGCAAGGACATGACAAACCCTGGTATGGAACTGTAGGAAGTGTTGCGGAGACAATCTCTAGCCAGAAGAATGGTTTCAATATCAAACAAGGATTGCCCAACTATCGAGCACCCAAATCTGCATATGCTGATGCACAACCAAAGCCAACACAGAGTATTGCACTTAGGACTAGCACTGTGATGTCTAGTAGCTGGAAGAATTCTGAAGAAGAGGAGTTCATGTGGGATGATATGAACTCCAAATCAACAGCTCATGGAGCATCCGATATTCCTATTGACCCAAGGAAAAATCATTCAGAAAAATTGGGGTTTGAATATCACCTTCAAAAACCACGCAGTTTAGATGATGTTGGATCAAAGGTCAATAAGGAAGTTTCCACTGATTTTATGTATAATGACCAGAAAGATTTTACTCCTTTTGGGAGCCGGACTTCATCCTCCTGGCCGTTGGAAGAATCACAATCCATTGATGGGCTGGTCCATACTTCAGGCCACTCAGAAGGCTTTGCTGCCACTCTCACACAGTCGTCAACAAGTGTAGCTTCTTCAATATCAAGAATAGGAGGTCATCAGCAGATGGGGGGCCTTGGGGTTCTAATAAATGCAGTGTCGGGGTCCACTGGAACTGTAGGGCAGCAGCGGTTTCAGTCTCAGGGAGCAGCATCACCATCTGCACAGTCACCCATGCACCAGCATCCTCAATCGCCTTCATTAGTAGTACGCCCTTCCCATCATCAGTTGCAAAATCTGGCCAAGCGGGAGCATCCACAGACTCTGTCCCTGCCTCAACCTAATTTAAAAGGAGCTCAATTTTTGGGCCGGTTGAACATGGGGCCTTCCAACCAATATGCTCAGGATTCATCACCTTTCCAGCATCCAAATGTTCAGCCAGGACCCTTGCAAAAGCTGCAGCCCCGAGGCTTACAAGCTTCTGCTTCAGTTCCTTCTTTTCAACCAAGGCACCATGATGAGCAACAATCAGACTCCATGCTGTCTCAGCCTTCTAGTGAGATTCGAAAGCCAATCCTCCCTTCAGTCTCTGATACTGGGTCTCCCTCAACAGTGGGGAATTCTGCATCAGACCATTCAGATCTTGCCGCAGAATCTTCAGGACAACCAAGCACAAGTAGTTTGTTAGCAGCTGTTATGAAGAGTGGAATTTTCTCTAACAATTCTATTACGGGTAGCCTACCTAATCTGACTGTCCCAGACATTGGGCAAATGCCTTCACACTCTGGTATTCAGCCTCCCCTGCCCAGTGGGCCTCCTCCAGTGCAGATTACATCCTCAGGGCCCAGTGTTGTGTCAGCAACTTCATTAGGTTCATCAAATAATAATGCACCAGTTCCTGCCAGTATATCTCAAAGAAATGCAGGACAACCACCTTTGCCATCTGGTCCACCACCTTCATCACTTGCGGGTAGTGCATCTGCACCAACCTCAAGTGCTGTGAATAATGCCTCAGATCCAATTTCAAACCTTTTGAGCTCATTAGTTGCAAAAGGTTTAATATCGGCTGCAAAGACCGAGGTGCCGACTACAGTGCCAACTCAAACCCCTAATCAATCACAAAAGAAGAGCCCAGGCACCATTGCGACTAGCTCTGTATCAGTTTCTTCTGTACCTGATTCCCTTCCGACAACAAGGGATGGGGTATCGTTGTTGGAACCTGCCAATCAAAGTTCTCCCGTGATGCCTCAATCCATCCCATTGGAAATCGAAAACCTCATAGGTTTCAAATTCAAGCCAGATGTAATTCGAGAATTCCATCCATCCGTGATCAATGGACTATTTGATGACCTTCCACTTCGGTGCAGTATTTGTGATATTCGACTGAAGCTTCAAGAAAGTCTTGATAGACACTTGGAGTGGCATGCTCAGAGAAAGCTTGAACCTAACGGTTTAATTAGCACATCAAGGAGATGGTATACAAACACAAGTGACTGGGTTGCTGGGACGGCAGGACTTGCATCTGGCATTGAGTCTGCTGACTCAGCCTATGAGTCTAGTGAGACCCTGGTCAAGGGTGAGCGCTTGGTTCCTGCAGATGAAACTCAATGTGCCTGTGTTTTGTGTGGACAGGTGTTTGAAGATTTTTACTGCCAAGAAAGGGATGAATGGATGTTCAAAGGGGCAGTATATATGACCATCTCATCTTGTGCTGGCGAGATAGAAATTTCAAACGACAATGCAGCTAAGGGTCCCATTGTGCATGCAAATTGTATTTCAGAAAGTTCAATTCATGACTTGGGACTGGCTAGTGGTATTAAAATGGAGAAGGATGTATAA
Protein:  
METRRSFDRSREPGLKKPRLAEEIERGKNPNPNGNGRPFVQRSVVVPPPRFRPSDRDSESSDSGRGGYQPQPPQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLHAAKAIAATVCANILEVPTEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPAVHSSMRHLFGTWKGVFPPPALQMIEKELGFTPIINVSSSLATTTSKPDSQSQRQPHSIHVNPKYLERQRLQQSGRNVQRTNRDGPSESVHEKTIGAAFGDYEYSSDLSRNSGSGTERTGGRMTEQGHDKPWYGTVGSVAETISSQKNGFNIKQGLPNYRAPKSAYADAQPKPTQSIALRTSTVMSSSWKNSEEEEFMWDDMNSKSTAHGASDIPIDPRKNHSEKLGFEYHLQKPRSLDDVGSKVNKEVSTDFMYNDQKDFTPFGSRTSSSWPLEESQSIDGLVHTSGHSEGFAATLTQSSTSVASSISRIGGHQQMGGLGVLINAVSGSTGTVGQQRFQSQGAASPSAQSPMHQHPQSPSLVVRPSHHQLQNLAKREHPQTLSLPQPNLKGAQFLGRLNMGPSNQYAQDSSPFQHPNVQPGPLQKLQPRGLQASASVPSFQPRHHDEQQSDSMLSQPSSEIRKPILPSVSDTGSPSTVGNSASDHSDLAAESSGQPSTSSLLAAVMKSGIFSNNSITGSLPNLTVPDIGQMPSHSGIQPPLPSGPPPVQITSSGPSVVSATSLGSSNNNAPVPASISQRNAGQPPLPSGPPPSSLAGSASAPTSSAVNNASDPISNLLSSLVAKGLISAAKTEVPTTVPTQTPNQSQKKSPGTIATSSVSVSSVPDSLPTTRDGVSLLEPANQSSPVMPQSIPLEIENLIGFKFKPDVIREFHPSVINGLFDDLPLRCSICDIRLKLQESLDRHLEWHAQRKLEPNGLISTSRRWYTNTSDWVAGTAGLASGIESADSAYESSETLVKGERLVPADETQCACVLCGQVFEDFYCQERDEWMFKGAVYMTISSCAGEIEISNDNAAKGPIVHANCISESSIHDLGLASGIKMEKDV